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Functional Genomics

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    • Director:


    Postal address:
    TAGC ERM206 case 928
    163, Avenue de Luminy
    13288 MARSEILLE cedex 09
    FRANCE
    Phone: +33(0)491828700
    Fax:+33(0)491828701
    Public Data

    This page consists of links to information or data available for scientific use. Please, refer to this page, not to inner links, since they may change.

    RNA duplexes: To be or not to be cleaved by Rnase III: (2007)

    Supplemental data for article: "RNA duplexes: To be or not to be cleaved by Rnase III".
    By William Ritchie, Matthieu Legendre & Daniel Gautheret. RNA (2007).
    Suppl. Table S1 Potential stem loops of at least 33 bp found in a random 1Mb region.
    Suppl. Table S2 Known RNA genes or motifs in initial structure set.

    The Disparate Nature of Intergenic Polyadenylation Sites: (2006/07/28)

    Supplemental data for article: "The Disparate Nature of Intergenic Polyadenylation Sites".
    By Fabrice Lopez, Samuel Granjeaud, Takeshi Ara, Badih Ghattas, Daniel Gautheret. RNA (2006).
    - Suppl. Table S1. Predicted poly(A) sites causing 3' gene extensions.
    - Suppl. Table S2. Predicted poly(A) sites corresponding to unnanotated intergenic transcripts.
    - Suppl. Table S3. Predicted poly(A) sites that do not present AAUAAA signals or known variants.

    - Polyadenylation Sites in AltPAS format for mouse and human.

    T-cell Lymphoma Project:

    Here is the direct access to detailled protocols.
    Here is the direct access to the clones list.
    GENE EXPRESSION PROFILING IDENTIFIES MOLECULAR SUBGROUPS AMONG NODAL PERIPHERAL T-CELL LYMPHOMAS. Benoît Ballester, Olivier Ramuz, Christian Gisselbrecht, Gaëlle Doucet, Laurence Loï, Béatrice Loriod, François Bertucci, Reda Bouabdallah, Elisabeth Devilard, Daniel Birnbaum, Pierre Brousset, Françoise Berger, Gilles Salles, Josette Briére, Rémi Houlgatte, Philippe Gaulard, Luc Xerri.
    For more information, please contact: ballester@tagc.univ-mrs.fr
    houlgatte@tagc.univ-mrs.fr
    xerril@marseille.fnclcc.fr

    Inflammatory Breast Cancer Project:

    Here is the direct access to material of the article:
    Gene expression profiling for molecular characterization of inflammatory breast cancer and prediction of response to chemotherapy. Bertucci F, Finetti P, Rougemont J, Charafe-Jauffret E, Nasser V, Loriod B, Camerlo J, Tagett R, Tarpin C, Houvenaegel G, Nguyen C, Maraninchi D, Jacquemier J, Houlgatte R, Birnbaum D, Viens P. Cancer Research, in revision.
    Histoclinical and RNA Expression data will be available as soon as the paper will be accepted. For more information, please contact bertuccif@marseille.fnclcc.fr.

    Lymphoma Project:

    Here is the direct access to protocols of the lymphoma paper accepted in Blood (MS#2003-06-2160). For more information, please contact: catherine.thieblemont@chu-lyon.fr or houlgatte@tagc.univ-mrs.fr.

    Oncocytoma Project:

    Here is the direct access to protocols and gene-list of the oncocytoma paper submitted for publication. Click here for both zipped files. For more information, please contact: olivier.baris@med.univ-angers.fr or houlgatte@tagc.univ-mrs.fr.

    Myeloma Project:

    Here is the direct access to data of the myeloma paper published in Blood. For more information, please contact: sminviel@nantes.inserm.fr or houlgatte@tagc.univ-mrs.fr.

    The Project with no name:

    A not so new filter with 1K cDNA clones

    ELOGE:

    Here is the direct access to the data base developped and used in our laboratory to fit our needs.

    ESTparser:

    Here is the direct access to our UTR analysis tools.

    ERPIN:

    Here is the direct access to the Easy RNA Profile IdentificatioN tool developped in our laboratory.

    Leukemia Project:

    Here is the direct access to on-line figures and references related to the Leukemia project. Parts of this work was published. For more information, please contact tonnellec@marseille.fnclcc.fr or chabanon@marseille.fnclcc.fr.

    Cancer Project:

    Here is the direct access to on-line figures and references related to the Cancer project. Parts of this work was published. For more information, please contact bertucci@tagc.univ-mrs.fr or birnbaum@marseille.inserm.fr.

    Vanin Project:

    Here is the direct access to data, figures and references related to the vanin project. For more information, please contact galland@ciml.univ-mrs.fr.

    LabNote Data Base:

    Here is the direct access to the data base previously used in our laboratory.