ReMap 2018

An integrative ChIP-seq analysis of regulatory regions

Welcome to ReMap an integrative analysis of transcriptional regulators ChIP-seq experiments from both Public and Encode datasets. The ReMap atlas consits of 80 million peaks from 485 transcription factors (TFs), transcription coactivators (TCAs) and chromatin-remodeling factors (CRFs). The atlas is available to browse or download either for a given TF or cell line, or for the entire dataset.
You can navigate ReMap on the UCSC Genome Browser [EU], [US], the Ensembl Browser [EU],[US],[Asia] or as Track Hubs.

Transcription FactorClassSourceAliasesCell Types
ADNPC2H2 zinc finger factors, Homeo domain factorsEncodeADNP1, HVDAS, MRD28K562
AFF4UnknownPublicAF5Q31, CHOPS, MCEFHELA HEK293T HCT166 HCT116 CD4
AHRBasic helix-loop-helix factors (bHLH)PublicbHLHe76MCF7
ARNuclear receptors with C4 zinc fingersPublicAIS, AR8, DHTR, HUMARA, HYSP1, KD, NR3C4, SBMA, SMAX1, TFMVCAP PROSTATE PLHSAR PC3 MDAMB453 MDAMB45 MCF7 LNCAP LHSAR DUCAP DU145 C42B 22RV1
ARID1AARID domain factorsPublicB120, BAF250, BAF250a, BM029, C1orf4, CSS2, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1HEPG2
ARID1BARID domain factorsPublic6A3-5, BAF250B, BRIGHT, CSS1, DAN15, ELD/OSA1, MRD12, OSA2, P250RHEPG2
ARID2ARID domain factorsPublicBAF200, p200HEPG2
ARID3AARID domain factorsEncodeBRIGHT, DRIL1, DRIL3, E2FBP1K562 HEPG2 GM12878
ARNTBasic helix-loop-helix factors (bHLH)Public + EncodeHIF-1-beta, HIF-1beta, HIF1-beta, HIF1B, HIF1BETA, TANGO, bHLHe2T47D MCF7 K562
ARNTLBasic helix-loop-helix factors (bHLH)PublicBMAL1, BMAL1c, JAP3, MOP3, PASD3, TIC, bHLHe5U2OS
ARRB1UnknownPublicARB1, ARR1PROSTATE C42
ASCL1Basic helix-loop-helix factors (bHLH)PublicASH1, HASH1, MASH1, bHLHa46SCLC NCIH889 NCIH82 NCIH2107 H128
ASH2LUnknownPublicASH2, ASH2L1, ASH2L2, Bre2VCAP
ASXL1UnknownPublicBOPS, MDSHEK293T
ATF1Basic leucine zipper factors (bZIP)EncodeEWS-ATF1, FUS/ATF-1, TREB36K562 HEPG2
ATF2Basic leucine zipper factors (bZIP)EncodeCRE-BP1, CREB-2, CREB2, HB16, TREB7GM12878 ESC
ATF3Basic leucine zipper factors (bZIP)Public + Encode-LIVER K562 HEPG2 HCT166 HCT116 GM12878 ESC A549
ATF4Basic leucine zipper factors (bZIP)Public + EncodeCREB-2, CREB2, TAXREB67, TXREBHMSC HEPG2
ATF7Basic leucine zipper factors (bZIP)EncodeATFAK562
ATRXOther C4 zinc finger-type factorsPublicJMS, MRX52, RAD54, RAD54L, XH2, XNP, ZNF-HXLAN6 K562 ERYTHROID
BACH1Basic leucine zipper factors (bZIP)EncodeBACH-1, BTBD24K562 HEPG2 GM12878 ESC A549
BACH2Basic leucine zipper factors (bZIP)PublicBTBD25OCILY7 DOHH2
BAHD1UnknownPublic-HEK293
BATFBasic leucine zipper factors (bZIP)Public + EncodeB-ATF, BATF1, SFA-2, SFA2OCILY3 OCILY10 GM12878
BCL11AC2H2 zinc finger factorsPublic + EncodeBCL11A-L, BCL11A-S, BCL11A-XL, BCL11a-M, CTIP1, DILOS, EVI9, HBFQTL5, ZNF856MDA157 MCF10A GM12878 ESC
BCL3Rel homology region (RHR) factorsEncodeBCL4, D19S37GM12878 A549
BCL6C2H2 zinc finger factorsPublicBCL5, BCL6A, LAZ3, ZBTB27, ZNF51OCILY7 OCILY1 CD4 BCELL
BCLAF1UnknownEncodeBTF, bK211L9.1K562 GM12878
BCORUnknownPublicANOP2, MAA2, MCOPS2BCELL
BDP1UnknownPublic + EncodeHSA238520, TAF3B1, TFC5, TFIIIB, TFIIIB150, TFIIIB90, TFNRK562 IMR90 HELA
BHLHE22Basic helix-loop-helix factors (bHLH)PublicBHLHB5, Beta3, Beta3a, CAGL85, TNRC20CAL1
BHLHE40Basic helix-loop-helix factors (bHLH)EncodeBHLHB2, Clast5, DEC1, HLHB2, SHARP-2, SHARP2, STRA13, Stra14K562 HEPG2 GM12878 A549
BMI1UnknownPublic + EncodeFLVI2/BMI1, PCGF4, RNF51, flvi-2/bmi-1K562 HEK293T
BMPR1AUnknownPublic10q23del, ACVRLK3, ALK3, CD292, SKR5HUVEC
BRCA1UnknownPublic + EncodeBRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4, PPP1R53, PSCP, RNF53MCF10A HEPG2 HELA GM12878 ESC A549
BRD1UnknownPublicBRL, BRPF1, BRPF2RKO
BRD2UnknownPublicBRD2-IT1, D6S113E, FSH, FSRG1, NAT, O27.1.1, RING3, RNF3MM1S HUVEC HEK293T
BRD3UnknownPublicORFX, RING3LMM1S HUVEC HEK293T
BRD4UnknownPublicCAP, HUNK1, HUNKI, MCAPU87MG T47D SW480 SUM185 SUM159 SUM149 SUM1315 SGBS P4936 OCILY1 NCIH2171 MV411 MPNST MOLM14 MM1S MDA436 MDA231 MDA157 MCF7 MCF10A LP1 KOPTK1 JURKAT IMR90 HUVEC HT29 HFOB HELA HEK293T HCT166 HCT15 HCT116 HCC1395 ESC DND41 COLO741 COLO320 COLO205 CD4 BT474 BE2C
BRF1UnknownEncodeBRF, BRF-1, CFDS, GTF3B, HEL-S-76p, TAF3B2, TAF3C, TAFIII90, TF3B90, TFIIIB90, hBRFK562 HELA
BRF2UnknownPublic + EncodeBRFU, TFIIIB50K562 IMR90 HELA
C17ORF49UnknownPublicBAP18, HEPISHELA
CARM1UnknownPublicPRMT4NCIH3396
CBFA2T2UnknownPublicEHT, MTGR1, ZMYND3, p85NCCIT
CBFBUnknownPublic + EncodePEBP2BSKNO1 ME1 K562 GM12878
CBX1UnknownEncodeCBX, HP1-BETA, HP1Hs-beta, HP1Hsbeta, M31, MOD1, p25betaK562 HEPG2
CBX2UnknownPublic + EncodeCDCA6, M33, SRXY5K562 HEK293T
CBX3UnknownEncodeHECH, HP1-GAMMA, HP1Hs-gammaK562 HCT166
CBX4UnknownPublicNBP16, PC2HEK293T
CCNT2UnknownEncodeCYCT2K562
CDK2UnknownPublicCDKN2, p33(CDK2)T47D
CDK6UnknownPublicMCPH12, PLSTIREKB
CDK7UnknownPublicCAK, CAK1, CDKN7, HCAK, MO15, STK1, p39MO15SKMEL147 MM1S JURKAT
CDK8UnknownPublicK35SW480 SET2 MV411 MOLM14 MM1S K562 HCT166
CDK9UnknownPublicC-2k, CDC2L4, CTK1, PITALRE, TAKP4936 MM1S HEK293T HCT166 CD4 BT474 A375
CDX2Homeo domain factorsPublicCDX-3, CDX2/AS, CDX3LS180 COLO320 CACO2
CEBPABasic leucine zipper factors (bZIP)PublicC/EBP-alpha, CEBPU937 SGBS LIVER KASUMI1 HEPG2
CEBPBBasic leucine zipper factors (bZIP)Public + EncodeC/EBP-beta, IL6DBP, NF-IL6, TCF5MONOCYTE MCF7 LS180 K562 ISHIKAWA IMR90 HMSC HFOB HEPG2 HELA HCT166 GM12878 ESC A549
CEBPDBasic leucine zipper factors (bZIP)EncodeC/EBP-delta, CELF, CRP3, NF-IL6-betaK562 HEPG2
CEBPGBasic leucine zipper factors (bZIP)EncodeGPE1BP, IG/EBP-1MCF7 K562
CEBPZUnknownEncodeCBF, CBF2, HSP-CBF, NOC1K562 HEPG2 GM12878
CHD1UnknownPublic + Encode-LNCAP K562 IMR90 HELA GM12878 ESC A549
CHD2UnknownEncodeEEOCK562 HEPG2 HELA GM12878 ESC A549
CHD4UnknownEncodeCHD-4, Mi-2b, Mi2-BETA, SIHIWESK562
CHD7UnknownEncodeCRG, HH5, IS3, KAL5K562 ESC
CHD8UnknownPublicAUTS18, HELSNF1T47D HNSC
CIITAUnknownPublicC2TA, CIITAIV, MHC2TA, NLRARAJI
CLOCKBasic helix-loop-helix factors (bHLH)PublicKAT13D, bHLHe8U2OS
CREB1Basic leucine zipper factors (bZIP)Public + EncodeCREB, CREB-1LNCAP KG1 K562 ISHIKAWA HEPG2 GM12878 ESC A549
CREB3Basic leucine zipper factors (bZIP)EncodeLUMAN, LZIP, sLZIPK562
CREB3L1Basic leucine zipper factors (bZIP)EncodeOASISK562
CREBBPUnknownPublic + EncodeCBP, KAT3A, RSTS, RSTS1NCIH3396 MCF7 LS180 K562
CREMBasic leucine zipper factors (bZIP)EncodeCREM-2, ICER, hCREM-2K562 GM12878
CRY1UnknownPublicDSPD, PHLL1U2OS
CSNK2A1UnknownPublicCK2A1, CKII, CSNK2A3, Cka1, Cka2, OCNDSLNCAP
CTBP1UnknownPublic + EncodeBARSMCF7 LNCAP
CTBP2UnknownPublic + Encode-LNCAP ESC
CTCFC2H2 zinc finger factorsPublic + EncodeMRD21ZR751 WI38VA13 WI38 WERIRB1 VCAP U937 TLYMPHOCYTE THP1 T47D SUM159 SUDHL6 SPLEEN SKNSH PANCREAS OVCAR8 OSTEOBLAST OCILY7 OCILY3 NEURAL NB4 MYOTUBE MYOBLAST MUSCLE MONOCYTE MM1S MEDULLOBLASTOMA MCF7 MCF10A LYMPHOCYTE LUNG LOUCY LNCAP KIDNEY KERATINOCYTE KARPAS422 K562 JURKAT ISLET ISHIKAWA IMR90 HSPC HL60 HFF HEPG2 HEPATOCYTE HELA HEK293 HCT166 H54 GP5D GM20000 GM19240 GM19239 GM19238 GM13977 GM13976 GM12892 GM12891 GM12878 GM12875 GM12874 GM12873 GM12872 GM12870 GM12869 GM12868 GM12867 GM12866 GM12865 GM12864 GM12801 GM10266 GM10248 GM06990 FIBROBLAST ESC ERYTHROID EPITHELIAL ENDOTHELIAL DOHH2 DND41 DELTA47 CHRF28811 CD14 CACO2 BL41 BJAB BJ BE2C BCELL BCBL1 ASTROCYTE ASC A549 813 786O
CTCFLC2H2 zinc finger factorsPublic + EncodeBORIS, CT27, CTCF-T, HMGB1L1, dJ579F20.2OVCAR8 NHDF K562 DELTA47
CTNNB1UnknownPublicCTNNB, MRD19, armadilloLS180
CUX1UnknownEncodeCASP, CDP, CDP/Cut, CDP1, COY1, CUTL1, CUX, Clox, Cux/CDP, GOLIM6, Nbla10317, p100, p110, p200, p75MCF7 K562 HEPG2 GM12878
CXXC4UnknownPublicIDAXHEK293T
DAXXUnknownPublicBING2, DAP6, EAP1PC3
DDX20UnknownEncodeDP103, GEMIN3K562
DDX5UnknownPublicG17P1, HLR1, HUMP68, p68NTERA2 HELA
DEAF1SAND domain factorsEncodeMRD24, NUDR, SPN, ZMYND5K562
DEKUnknownEncodeD6S231EHELA
DIDO1UnknownEncodeBYE1, C20orf158, DATF-1, DATF1, DIDO2, DIDO3, DIO-1, DIO1, dJ885L7.8K562
DNMT3BOther C4 zinc finger-type factorsEncodeICF, ICF1, M.HsaIIIBHEPG2
DPF2UnknownEncodeREQ, UBID4, ubi-d4MCF7 K562
DPPA3UnknownPublicPgc7, STELLAHEK293T
DUX4Homeo domain factorsPublicDUX4LHEK293
E2F1Fork head / winged helix factorsPublic + EncodeE2F-1, RBAP1, RBBP3, RBP3MESENCHYMAL MCF7 LNCAP HMEC1 HELA
E2F4Fork head / winged helix factorsPublic + EncodeE2F-4RETINAL MCF7 MCF10A LYMPHOBLASTOID K562 HELA GM12878
E2F5Fork head / winged helix factorsEncodeE2F-5K562
E2F6Fork head / winged helix factorsEncodeE2F-6K562 HELA ESC A549
E2F7Fork head / winged helix factorsPublic-IMR90
EBF1Rel homology region (RHR) factorsPublic + EncodeCOE1, EBF, O/E-1, OLF1MUTUL LCL GM12878 ASC
EEDUnknownPublic + EncodeHEED, WAIT1PROES GM12878
EGLN2UnknownPublicEIT6, HIF-PH1, HIFPH1, HPH-1, HPH-3, PHD1T47D
EGR1C2H2 zinc finger factorsEncodeAT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268, ZNF225MCF7 K562 ISHIKAWA HCT166 GM12878 ESC
EHFTryptophan cluster factorsPublicESE3, ESE3B, ESEJCALU3
ELF1Tryptophan cluster factorsPublic + EncodeEFTUD1, RIA1SKNSH SKNMC ME1 MCF7 K562 HEPG2 HCT166 GM12878 A549
ELF3Tryptophan cluster factorsPublicEPR-1, ERT, ESE-1, ESXPDAC
ELF5Tryptophan cluster factorsPublicESE2T47D
ELK1Tryptophan cluster factorsPublic + Encode-MCF7 K562 HELA GM12878 ESC A549
ELK4Tryptophan cluster factorsEncodeSAP1HELA HEK293
ELLUnknownPublicC19orf17, ELL1, MEN, PPP1R68HCT166
ELL2UnknownPublicMRCCAT1HELA HCT116
EOMEST-Box factorsPublicTBR2ESC
EP300UnknownPublic + EncodeKAT3B, RSTS2, p300T47D SKNSH OSTEOBLAST NEURAL MCF7 K562 ISHIKAWA HEPG2 HELA GM12878 ESC A549
EPAS1Basic helix-loop-helix factors (bHLH)PublicECYT4, HIF2A, HLF, MOP2, PASD2, bHLHe73MACROPHAGE 786O
ERGTryptophan cluster factorsPublicerg-3, p55VCAP TSU1621MT SKNO1 RWPE1 ME1 MCF7 K562 JURKAT CD34 AMLPZ12
ESR1Nuclear receptors with C4 zinc fingersPublic + EncodeER, ESR, ESRA, ESTRR, Era, NR3A1ZR751 VCAP T47D NCIH3396 MDAMB134VI MCF7 ISHIKAWA HCC1428 BREAST
ESR2Nuclear receptors with C4 zinc fingersPublicER-BETA, ESR-BETA, ESRB, ESTRB, Erb, NR3A2MCF7
ESRRANuclear receptors with C4 zinc fingersPublic + EncodeERR1, ERRa, ERRalpha, ESRL1, NR3B1SKBR3 MCF7 K562 HEPG2 GM12878 BT474 A549
ETS1Tryptophan cluster factorsPublic + EncodeETS-1, EWSR2, c-ets-1, p54RWPE1 PANC1 K562 HUVEC GM12878 ESC DU145 A549
ETV1Tryptophan cluster factorsPublic + EncodeER81RWPE1 LNCAP K562 GIST
ETV4Tryptophan cluster factorsEncodeE1A-F, E1AF, PEA3, PEAS3HEPG2
ETV6Tryptophan cluster factorsEncodeTEL, TEL/ABL, THC5K562 GM12878
EWSR1UnknownPublicEWS, EWS-FLI1, bK984G1.4HEK293
EZH1UnknownPublicKMT6BPROES
EZH2UnknownPublic + EncodeENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS, WVS2WSUDLCL2 VCAP SUDHL6 SUDHL5 PROES PFEIFFER OCILY7 OCILY1 MYOTUBE MYOBLAST LNCAP KERATINOCYTE KARPAS422 K562 HEPG2 HELA GM12878 FIBROBLAST FARAGE ESC EPITHELIAL ENDOTHELIAL DND41 BCELL ASTROCYTE
FANCLUnknownPublicFAAP43, PHF9, POGJURKAT
FLI1Tryptophan cluster factorsPublicBDPLT21, EWSR2, SIC-1UAE TSU1621MT SKNO1 SKNMC NB4 ME1
FOSBasic leucine zipper factors (bZIP)Public + EncodeAP-1, C-FOS, p55MV411 MCF10A K562 HEPG2 HELA GM12878 ENDOTHELIAL
FOSL1Basic leucine zipper factors (bZIP)Public + EncodeFRA, FRA1, fra-1K562 HCT166 ESC BT549
FOSL2Basic leucine zipper factors (bZIP)Public + EncodeFRA2SKNSH MCF7 HFOB HEPG2 ESC A549
FOXA1Fork head / winged helix factorsPublic + EncodeHNF3A, TCF3AZR751 VCAP T47D PDAC NCIH3122 MDAMB453 MCF7 LNCAP LIVER ISHIKAWA HUH7 HEPG2 DU145 C42B A549
FOXA2Fork head / winged helix factorsPublic + EncodeHNF3B, TCF3BPANCREAS LIVER ISLET HEPG2 ESC CACO2 A549
FOXJ2Fork head / winged helix factorsEncodeFHXK562
FOXK1Fork head / winged helix factorsPublicFOXK1LHEK293T
FOXK2Fork head / winged helix factorsEncodeILF, ILF-1, ILF1MCF7 K562 HEPG2
FOXM1Fork head / winged helix factorsPublic + EncodeFKHL16, FOXM1B, HFH-11, HFH11, HNF-3, INS-1, MPHOSPH2, MPP-2, MPP2, PIG29, TRIDENTU2OS SKNSH OE33 MDAMB231 MCF7 ISHIKAWA HMEC1 HELA HEK293 GM12878
FOXO1Fork head / winged helix factorsPublicFKH1, FKHR, FOXO1AESC BCELL
FOXP1Fork head / winged helix factorsPublic12CC4, HSPC215, MFH, QRF1, hFKH1BVCAP U2932 SUDHL6 SUDHL4 RCK8 PROGENITOR LNCAP ESC
FOXP2Fork head / winged helix factorsEncodeCAGH44, SPCH1, TNRC10SKNMC PFSK1
GABPATryptophan cluster factorsPublic + EncodeE4TF1-60, E4TF1A, NFT2, NRF2, NRF2A, RCH04A07VCAP SKNSH RWPE1 MCF7 K562 JURKAT HL60 HEPG2 HELA GM12878 ESC DU145 A549
GATA1Other C4 zinc finger-type factorsPublic + EncodeERYF1, GATA-1, GF-1, GF1, NF-E1, NFE1, XLANP, XLTDA, XLTTK562 ERYTHROID ERYTHROBLAST CHRF28811 CD34
GATA2Other C4 zinc finger-type factorsPublic + EncodeDCML, IMD21, MONOMAC, NFE1BTSU1621MT TF1 SHSY5Y ME1 LNCAP K562 HL60 ENDOTHELIAL CD34
GATA3Other C4 zinc finger-type factorsPublic + EncodeHDR, HDRSTHYMOCYTE T47D SKNSH SHSY5Y RPMI8402 NGP MCF7 KELLY JURKAT CD4 CCRFCEM BE2C A549
GATA4Other C4 zinc finger-type factorsPublic + EncodeASD2, TACHD, TOF, VSD1YCC3 KATOIII HEPG2 AGS
GATA6Other C4 zinc finger-type factorsPublic-YCC3 PATU8988 LS174T KATOIII HUG1N ESC CACO2 AGS
GATAD1Other C4 zinc finger-type factorsPublicCMD2B, ODAG, RG083M05.2HELA
GFI1BC2H2 zinc finger factorsPublic + EncodeBDPLT17, ZNF163BK562 CD34
GLYR1UnknownPublicBM045, HIBDL, N-PAC, NP60HELA
GRHL2Grainyhead domain factorsPublicBOM, DFNA28, ECTDS, TFCP2L3PEO1 OVCAR3 OVCA429 HBE
GSPT2UnknownPublicERF3B, GST2HEK293T
GTF2BUnknownPublic + EncodeTF2B, TFIIBLCL K562 IMR90 HELA
GTF2F1UnknownEncodeBTF4, RAP74, TF2F1, TFIIFMCF7 K562 HELA GM12878 ESC
GTF3C2UnknownEncodeTFIIIC-BETA, TFIIIC110K562 HELA
HBP1High-mobility group (HMG) domain factorsEncode-HEPG2
HCFC1UnknownPublic + EncodeCFF, HCF, HCF-1, HCF1, HFC1, MRX3, PPP1R89, VCAFMCF7 K562 HEPG2 HELA GM12878
HDAC1UnknownPublic + EncodeGON-10, HD1, RPD3, RPD3L1VCAP K562
HDAC2UnknownPublic + EncodeHD2, RPD3, YAF1VCAP MCF7 K562 HEPG2 ESC
HDAC3UnknownPublicHD3, RPD3, RPD3-2VCAP
HDAC6UnknownEncodeCPBHM, HD6, JM21, PPP1R90K562 ESC
HDAC8UnknownEncodeCDA07, CDLS5, HD8, HDACL1, MRXS6, RPD3, WTSK562
HDGFUnknownEncodeHMG1L2K562
HES1Basic helix-loop-helix factors (bHLH)PublicHES-1, HHL, HRY, bHLHb39SW1353
HEXIM1UnknownPublicCLP1, EDG1, HIS1, MAQ1HCT166
HHEXHomeo domain factorsEncodeHEX, HMPH, HOX11L-PEN, PRH, PRHXHEPG2
HIF1ABasic helix-loop-helix factors (bHLH)PublicHIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1, PASD8, bHLHe78T47D MACROPHAGE HUVEC H1299 786O
HINFPC2H2 zinc finger factorsEncodeHiNF-P, MIZF, ZNF743K562
HMBOX1Homeo domain factorsPublic + EncodeHNF1LA, HOT1, PBHNFWI38VA13 K562 HELA
HMGN3UnknownEncodePNAS-24, PNAS-25, TRIP7K562
HNF1BHomeo domain factorsPublicFJHN, HNF-1-beta, HNF-1B, HNF1beta, HNF2, HPC11, LF-B3, LFB3, MODY5, TCF-2, TCF2, VHNF1PDAC ESC
HNF4ANuclear receptors with C4 zinc fingersPublic + EncodeFRTS4, HNF4, HNF4a7, HNF4a8, HNF4a9, HNF4alpha, MODY, MODY1, NR2A1, NR2A21, TCF, TCF14LOVO LIVER HEPG2 HCT166 GP5D CACO2
HNF4GNuclear receptors with C4 zinc fingersEncodeNR2A2, NR2A3HEPG2
HOXA9Homeo domain factorsPublicABD-B, HOX1, HOX1.7, HOX1GSEM
HOXB13Homeo domain factorsPublicPSGDLNCAP
HOXB7Homeo domain factorsPublicHHO.C1, HOX2, HOX2C, Hox-2.3BT474
HOXC11Homeo domain factorsPublicHOX3HMCF7
HSF1Heat shock factorsPublic + EncodeHSTF1ZR751 WM451LU U2OS SW620 SKBR3 NCIH838 NCIH441 NCIH1703 MO91 MCF7 MCF10A HT29 HMLER HME1 HEPG2 HCT166 HCT15 GM12878 COLON BT20 BREAST BPLER BPE
ICE1UnknownPublicKIAA0947HCT166
ICE2UnknownPublicBRCC1, NARG2HCT166
ID3Basic helix-loop-helix factors (bHLH)EncodeHEIR-1, bHLHb25K562
IKZF1C2H2 zinc finger factorsPublic + EncodeCVID13, Hs.54452, IK1, IKAROS, LYF1, LyF-1, PPP1R92, PRO0758, ZNFN1A1K562 HSPC HEPG2 GM12878
ILKUnknownEncodeHEL-S-28, ILK-1, ILK-2, P59, p59ILKK562
IRF1Tryptophan cluster factorsPublic + EncodeIRF-1, MARPDAC K562 CD14
IRF2Tryptophan cluster factorsPublic + EncodeIRF-2K562 CD34
IRF3Tryptophan cluster factorsEncodeIIAE7HEPG2 HELA GM12878
IRF4Tryptophan cluster factorsPublic + EncodeLSIRF, MUM1, NF-EM5, SHEP8OCILY3 NCIH929 MM1S GM12878
IRF9Tryptophan cluster factorsEncodeIRF-9, ISGF3, ISGF3G, p48K562
JARID2ARID domain factorsPublicJMJUTEIPS7 UTEIPS6 UTEIPS4 UTEIPS11 MRC5 EDOMIPS2 AMIPS8 AMIPS6
JMJD1CUnknownPublicKDM3C, TRIP-8, TRIP8THP1 NB4 KASUMI1 HL60
JMJD6UnknownPublicPSR, PTDSR, PTDSR1HELA HEK293T
JUNBasic leucine zipper factors (bZIP)Public + EncodeAP-1, AP1, c-JunMDAMB231 MCF7 K562 HEPG2 HELA ESC ENDOTHELIAL BT549 A549
JUNBBasic leucine zipper factors (bZIP)Public + EncodeAP-1KERATINOCYTE K562 GM12878 ESC
JUNDBasic leucine zipper factors (bZIP)Public + EncodeAP-1T47D SKNSH PC3 MCF7 K562 HT29 HFOB HEPG2 HELA HCT166 GP5D GM12878 ESC A549
KAT2AUnknownEncodeGCN5, GCN5L2, PCAF-b, hGCN5HELA
KAT2BUnknownEncodeCAF, P/CAF, PCAFK562 HEPG2 A549
KDM1AUnknownPublic + EncodeAOF2, BHC110, CPRF, KDM1, LSD1SKNO1 SHSY5Y NCIH526 KERATINOCYTE KASUMI1 K562 HELA
KDM1BUnknownPublicAOF1, C6orf193, LSD2, bA204B7.3, dJ298J15.2HEPG2
KDM4AUnknownEncodeJHDM3A, JMJD2, JMJD2A, TDRD14AESC
KDM4BUnknownEncodeJMJD2B, TDRD14BK562
KDM4CUnknownPublicGASC1, JHDM3C, JMJD2C, TDRD14CKYSE150
KDM5AARID domain factorsPublic + EncodeRBBP-2, RBBP2, RBP2T47D ESC
KDM5BARID domain factorsPublic + EncodeCT31, JARID1B, PLU-1, PLU1, PPP1R98, PUT1, RBBP2H1A, RBP2-H1T47D SUM185 SUM159 MDAMB231 MCF7 K562 HCC2157 ESC
KDM6BUnknownPublicJMJD3CUTLL1
KLF1C2H2 zinc finger factorsPublic + EncodeEKLFK562 ERYTHROID
KLF13C2H2 zinc finger factorsEncodeBTEB3, FKLF2, NSLP1, RFLAT-1, RFLAT1K562
KLF3C2H2 zinc finger factorsPublicBKLFHEK293
KLF4C2H2 zinc finger factorsPublicEZF, GKLFPDAC MCF7 KERATINOCYTE IPSC ESC BJ
KLF5C2H2 zinc finger factorsPublic + EncodeBTEB2, CKLF, IKLFYCC3 LOVO KATOIII GP5D GM12878 AGS
KLF6C2H2 zinc finger factorsPublicBCD1, CBA1, COPEB, CPBP, GBF, PAC1, ST12, ZF9PDAC
KLF9C2H2 zinc finger factorsPublic + EncodeBTEB, BTEB1MCF7 GBM1A
KMT2ACXXC zinc finger factorsPublicALL-1, CXXC7, HRX, HTRX1, MLL, MLL1, MLL1A, TRX1, WDSTSRSA411 CD34
KMT2BCXXC zinc finger factorsPublicCXXC10, DYT28, HRX2, MLL1B, MLL2, MLL4, TRX2, WBP-7, WBP7BCELL
L3MBTL2UnknownPublicH-l(3)mbt-l, L3MBTK562
LDB1UnknownPublicCLIM-2, CLIM2, LDB-1, NLIHEP
LEF1High-mobility group (HMG) domain factorsPublicLEF-1, TCF10, TCF1ALPHA, TCF7L3ESC
LHX2Homeo domain factorsPublicLH2, hLhx2RETINAL
LMO2UnknownPublicRBTN2, RBTNL1, RHOM2, TTG2TSU1621MT KASUMI1 CCRFCEM
LRWD1UnknownPublicCENP-33, ORCAHELA
LYL1Basic helix-loop-helix factors (bHLH)PublicbHLHa18TSU1621MT THP1 NB4 KASUMI1
MAFBasic leucine zipper factors (bZIP)PublicAYGRP, CCA4, CTRCT21, c-MAFKERATINOCYTE CD4
MAFBBasic leucine zipper factors (bZIP)PublicDURS3, KRML, MCTOKERATINOCYTE ISLET
MAFFBasic leucine zipper factors (bZIP)EncodeU-MAF, hMafFK562 HEPG2 HELA GM12878
MAFGBasic leucine zipper factors (bZIP)EncodehMAFK562
MAFKBasic leucine zipper factors (bZIP)Public + EncodeNFE2U, P18OCILY7 MCF7 K562 IMR90 HEPG2 HELA GM12878 ESC A549
MAML3UnknownPublicCAGH3, ERDA3, GDN, MAM-2, MAM2, TNRC3SKNSH
MAXBasic helix-loop-helix factors (bHLH)Public + EncodebHLHd4U87MG SKNSH P4936 NCIH2171 NB4 MM1S MCF7 K562 ISHIKAWA HEPG2 HELA HCT166 H128 GM12878 ESC ENDOTHELIAL A549
MAZC2H2 zinc finger factorsEncodePUR1, Pur-1, SAF-1, SAF-2, SAF-3, ZF87, ZNF801, Zif87MCF7 K562 IMR90 HEPG2 HELA GM12878 A549
MBD1CXXC zinc finger factorsEncodeCXXC3, PCM1, RFTHEPG2
MBD2UnknownPublicDMTase, NY-CO-41MCF7 HMLER HMEC1 HELA
MBD3UnknownPublic-MCF7 HELA
MBD4UnknownEncodeMED1HEPG2
MDM2UnknownPublicACTFS, HDMX, hdm2H1299
MED1UnknownPublicCRSP1, CRSP200, DRIP205, DRIP230, PBP, PPARBP, PPARGBP, RB18A, TRAP220, TRIP2U87MG SGBS P4936 OCILY1 NCIH2171 MYOBLAST MOLM14 MM1S MCF7 LS180 JURKAT ESC CD4
MED26UnknownPublicCRSP7, CRSP70U2OS
MEF2AMADS box factorsEncodeADCAD1, RSRFC4, RSRFC9, mef2SKNSH K562 GM12878
MEF2BMADS box factorsPublicRSRFR2OCILY7 KARPAS422 DOHH2
MEF2CMADS box factorsPublic + EncodeC5DELq14.3, DEL5q14.3HUVEC GM12878
MEIS1Homeo domain factorsPublic-SEM HSPC CHRF28811
MEIS2Homeo domain factorsEncodeCPCMR, HsT18361, MRG1K562
MIER1Tryptophan cluster factorsEncodeER1, MI-ER1K562
MITFBasic helix-loop-helix factors (bHLH)Public + EncodeCMM8, COMMAD, MI, WS2, WS2A, bHLHe32RETINAL MELANOCYTE K562 501MEL
MLLT1UnknownEncodeENL, LTG19, YEATS1MCF7 K562
MLLT3UnknownPublicAF9, YEATS3NPCS CD34
MNTBasic helix-loop-helix factors (bHLH)EncodeMAD6, MXD6, ROX, bHLHd3MCF7
MTA1Other C4 zinc finger-type factors, Tryptophan cluster factorsEncode-MCF7
MTA2Other C4 zinc finger-type factors, Tryptophan cluster factorsEncodeMTA1L1, PIDMCF7 K562
MTA3Other C4 zinc finger-type factors, Tryptophan cluster factorsEncode-K562 GM12878
MXI1Basic helix-loop-helix factors (bHLH)EncodeMAD2, MXD2, MXI, bHLHc11SKNSH NEURAL K562 IMR90 HEPG2 HELA GM12878 ESC
MYBTryptophan cluster factorsPublic + EncodeCmyb, c-myb, c-myb_CDS, efgMOLT3 JURKAT GM12878 CD4
MYBL2Tryptophan cluster factorsPublic + EncodeB-MYB, BMYBHMEC1 HEPG2
MYCBasic helix-loop-helix factors (bHLH)Public + EncodeMRTL, MYCC, bHLHe39, c-MycU87MG U2OS RAMOS RAJI PAVE P4936 NCIH2171 NB4 MM1S MDAMB453 MDAMB231 MCF7 MCF10A LS174T LOVO LCL K562 JURKAT IMEC HFF HEPG2 HELA H128 GP5D GM12878 ESC ENDOTHELIAL CD34 CA46 BREAST BLUE1 BL41 BJ BE2C A549
MYCNBasic helix-loop-helix factors (bHLH)PublicMODED, N-myc, NMYC, ODED, bHLHe37SMSKCNR SMSKCN SHSY5Y SHEP21 NGP KELLY BE2C
MYNNC2H2 zinc finger factorsEncodeOSZF, SBBIZ1, ZBTB31, ZNF902K562
MYOD1Basic helix-loop-helix factors (bHLH)PublicMYF3, MYOD, PUM, bHLHc1RHABDOMYOSARCOMA MYOBLAST
NANOGHomeo domain factorsPublic + Encode-ESC
NBNUnknownEncodeAT-V1, AT-V2, ATV, NBS, NBS1, P95K562
NCOA1Basic helix-loop-helix factors (bHLH)Public + EncodeF-SRC-1, KAT13A, RIP160, SRC1, bHLHe42, bHLHe74MCF7 LS180 K562
NCOA2Basic helix-loop-helix factors (bHLH)PublicGRIP1, KAT13C, NCoA-2, SRC2, TIF2, bHLHe75MCF7
NCOA3Basic helix-loop-helix factors (bHLH)PublicACTR, AIB-1, AIB1, CAGH16, CTG26, KAT13B, RAC3, SRC-3, SRC3, TNRC14, TNRC16, TRAM-1, bHLHe42, pCIPMCF7
NCORTryptophan cluster factorsPublicncor1 + ncor2OCILY1 LS180 HEK293T
NCOR1Tryptophan cluster factorsEncodeN-CoR, N-CoR1, PPP1R109, TRAC1, hN-CoRK562
NCOR2Tryptophan cluster factorsPublicCTG26, N-CoR2, SMAP270, SMRT, SMRTE, SMRTE-tau, TNRC14, TRAC, TRAC-1, TRAC1OCILY1 LS180 BCELL
NELFAUnknownPublicNELF-A, P/OKcl.15, WHSC2BT474
NEUROD1Basic helix-loop-helix factors (bHLH)Public + EncodeBETA2, BHF-1, MODY6, NEUROD, bHLHa3NCIH524 K562
NFATC1Rel homology region (RHR) factorsPublic + EncodeNF-ATC, NF-ATc1.2, NFAT2, NFATcHUVEC GM12878
NFE2Basic leucine zipper factors (bZIP)Public + EncodeNF-E2, p45PROES K562 GM12878 ERYTHROID
NFE2L1Basic leucine zipper factors (bZIP)EncodeLCR-F1, NRF1, TCF11K562
NFE2L2Basic leucine zipper factors (bZIP)Public + EncodeHEBP1, NRF2K562 HEPG2 A549 A375
NFICSMAD/NF-1 DNA-binding domain factorsEncodeCTF, CTF5, NF-I, NFISKNSH ISHIKAWA HEPG2 GM12878
NFKB1Rel homology region (RHR) factorsPublicCVID12, EBP-1, KBF1, NF-kB1, NF-kappa-B, NF-kappaB, NFKB-p105, NFKB-p50, NFkappaB, p105, p50L1236
NFKB2Rel homology region (RHR) factorsPublicCVID10, H2TF1, LYT-10, LYT10, NF-kB2, p100, p49/p100, p52L1236
NFKBIARel homology region (RHR) factorsPublicIKBA, MAD-3, NFKBIDERMAL
NFRKBUnknownEncodeINO80GK562
NFYAHeteromeric CCAAT-binding factorsPublic + EncodeCBF-A, CBF-B, HAP2, NF-YAK562 HELA GM12878
NFYBHeteromeric CCAAT-binding factorsPublic + EncodeCBF-A, CBF-B, HAP3, NF-YBK562 HELA GM12878
NIPBLUnknownPublicCDLS, CDLS1, IDN3, IDN3-B, Scc2LCL GP5D ESC
NKX2Homeo domain factorsPublic + EncodeBCH, BHC, NK-2, NKX2.1, NKX2A, NMTC1, T/EBP, TEBP, TITF1, TTF-1, TTF1 , NKX2.2,NKX2BNCIH3122 NCIH2087 NCIH1819 ISLET
NKX3Homeo domain factorsPublicNKX3-1, BAPX2, NKX3, NKX3.1, NKX3ALNCAP ISLET
NME2UnknownPublicNDKB, NDPK-B, NDPKB, NM23-H2, NM23B, PUFA549
NONONonO domain factorsEncodeMRXS34, NMT55, NRB54, P54, P54NRB, PPP1R114MCF7 K562
NOTCH1UnknownPublicAOS5, AOVD1, TAN1, hN1HPBALL CUTLL1 CD34
NR1H2Nuclear receptors with C4 zinc fingersPublicLXR-b, LXRB, NER, NER-I, RIP15, UNRHT29
NR1H3Nuclear receptors with C4 zinc fingersPublicLXR-a, LXRA, RLD-1THP1 SGBS
NR2C2Nuclear receptors with C4 zinc fingersPublic + EncodeTAK1, TR4WI38VA13 K562 HEPG2 HELA GM12878 ERYTHROID
NR2F1Nuclear receptors with C4 zinc fingersPublic + EncodeBBOAS, BBSOAS, COUP-TFI, EAR-3, EAR3, ERBAL3, NR2F2, SVP44, TCFCOUP1, TFCOUP1MCF7 K562
NR2F2Nuclear receptors with C4 zinc fingersPublic + EncodeARP1, CHTD4, COUPTFB, COUPTFII, NF-E3, NR2F1, SVP40, TFCOUP2WI38VA13 STROMA MCF7 K562 HEPG2 HELA
NR2F6Nuclear receptors with C4 zinc fingersEncodeEAR-2, EAR2, ERBAL2HEPG2
NR3C1Nuclear receptors with C4 zinc fingersPublic + EncodeGCCR, GCR, GCRST, GR, GRLZR751 U2OS T47D RSA411 NALM6 MM1S MCF7 LNCAP LCL K562 ISHIKAWA IMR90 HMSC HEPG2 HELAB2 GM12878 A549
NR4A1Nuclear receptors with C4 zinc fingersPublic + EncodeGFRP1, HMR, N10, NAK-1, NGFIB, NP10, NUR77, TR3KASUMI1 K562
NR5A2Nuclear receptors with C4 zinc fingersPublicB1F, B1F2, CPF, FTF, FTZ-F1, FTZ-F1beta, LRH-1, LRH1, hB1F-2MCF7
NRF1UncharacterizedPublic + EncodeALPHA-PALT47D SKNSH NAMALWA MCF7 K562 HMEC1 HEPG2 HELA HCC1954 GM12878 ESC
NRIP1UnknownPublicRIP140MCF7
NSD2High-mobility group (HMG) domain factorsEncodeKMT3F, KMT3G, MMSET, REIIBP, TRX5, WHS, WHSC1K562
OCA2UnknownPublicBEY, BEY1, BEY2, BOCA, D15S12, EYCL, EYCL2, EYCL3, HCL3, P, PED, SHEP1HBL1
ONECUT1Homeo domain factorsPublicHNF-6, HNF6, HNF6ALIVER ESC
OTX2Homeo domain factorsPublicCPHD6, MCOPS5RETINAL
OVOL2C2H2 zinc finger factorsPublicCHED, CHED1, CHED2, EUROIMAGE566589, PPCD1, ZNF339HCET HCEC
PALB2UnknownPublicFANCN, PNCA3MCF10A
PAX5Paired box factorsPublic + EncodeALL3, BSAPOCILY7 GM12892 GM12891 GM12878 DOHH2
PAX6Paired box factorsPublicAN, AN2, ASGD5, D11S812E, FVH1, MGDA, WAGRRETINAL
PAX8Paired box factorsPublic + Encode-OVSAHO KURAMOCHI K562 JHOS4 FT33 FT246 FT194
PBX2Homeo domain factorsEncodeG17, HOX12, PBX2MHCK562 HEPG2
PBX3Homeo domain factorsEncode-SKNSH GM12878 A549
PCGF2UnknownPublicMEL-18, RNF110, ZNF144FIBROBLAST
PDX1Homeo domain factorsPublicGSF, IDX-1, IPF1, IUF1, MODY4, PAGEN1, PDX-1, STF-1ISLET ESC
PGRNuclear receptors with C4 zinc fingersPublicNR3C3, PRT47D MCF7 LEIOMYOMA HUVEC ESC AB32
PHF8UnknownPublic + EncodeJHDM1F, KDM7B, MRXSSD, ZNF422K562 HELA ESC
PIAS1UnknownPublicDDXBP1, GBP, GU/RH-II, ZMIZ3LNCAP
PKNOX1Homeo domain factorsEncodePREP1, pkonx1cK562
PMLUnknownEncodeMYL, PP8675, RNF71, TRIM19MCF7 K562 GM12878
POU2F1Homeo domain factorsPublicOCT1, OTF1, oct-1BIMR90
POU2F2Homeo domain factorsPublic + EncodeOCT2, OTF2, Oct-2HNPC HBL1 GM12891 GM12878 BJAB
POU4F2Homeo domain factorsPublicBRN3.2, BRN3B, Brn-3bHNPC
POU5F1Homeo domain factorsPublic + EncodeOCT3, OCT4, OTF-3, OTF3, OTF4, Oct-3, Oct-4NCCIT K562 IPSC ESC BJ BGO3
PPARGNuclear receptors with C4 zinc fingersPublicCIMT1, GLM1, NR1C3, PPARG1, PPARG2, PPARgammaWPMY1 THP1 SGBS MACROPHAGE HUVEC HT29 ASC
PPARGC1AUnknownEncodeLEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A, PPARGC1HEPG2
PRDM1C2H2 zinc finger factorsEncodeBLIMP1, PRDI-BF1HELA
PRDM14C2H2 zinc finger factorsPublicPFM11NCCIT ESC
PRKDCUnknownPublicDNA-PKcs, DNAPK, DNPK1, HYRC, HYRC1, IMD26, XRCC7, p350MCF7 FIBROBLAST
PROX1Homeo domain factorsPublic-SW480
PTRFUnknownEncodeCAVIN1 , CAVIN, CGL4, FKSG13, PTRF, cavin-1K562
PTTG1UnknownEncodeEAP1, HPTTG, PTTG, TUTR1K562
PYGO2UnknownEncode1190004M21RikK562
RAC3UnknownPublic-NCIH3396
RAD21UnknownPublic + EncodeCDLS4, HR21, HRAD21, MCD1, NXP1, SCC1, hHR21THP1 SKNSH NEURAL MCF7 LOVO K562 ISHIKAWA IMR90 HEPG2 HELA HCT166 GP5D GM12878 ESC CHRF28811 A549
RAD51UnknownPublic + EncodeBRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2, RAD51A, RECAU2OS K562
RARANuclear receptors with C4 zinc fingersPublicNR1B1, RARTSU1621MT SKNSH
RB1UnknownPublic + EncodeOSRC, PPP1R130, RB, p105-Rb, pRb, pp110K562 GM12878 FIBROBLAST
RBBP5UnknownEncodeRBQ3, SWD1K562 ESC
RBP2UnknownPublicCRABP-II, CRBP2, CRBPII, RBPC2U937
RBPJRel homology region (RHR) factorsPublicAOS3, CBF1, IGKJRB, IGKJRB1, KBF2, RBP-J, RBPJK, RBPSUH, SUH, cslNHEK MUTUL LCL GIC FIBROBLAST CUTLL1
RCOR1Tryptophan cluster factorsPublic + EncodeCOREST, RCORMCF7 KERATINOCYTE K562 IMR90 HEPG2 HELA GM12878 A549
RELARel homology region (RHR) factorsPublic + EncodeNFKB3, p65SGBS MCF7 LNCAP L1236 KB K562 IMR90 HUVEC HELAB2 HDF GM19193 GM19099 GM18951 GM18526 GM18505 GM15510 GM12892 GM12891 GM12878 GM10847 CD4 AC16
RELBRel homology region (RHR) factorsPublicI-REL, IREL, REL-BL1236
RESTC2H2 zinc finger factorsPublic + EncodeNRSF, WT6, XBRSKNSH PFSK1 PANC1 NEURAL NCIH295R MCF7 K562 ISHIKAWA HL60 HEPG2 HEPATOCYTE HELA HCT166 GP5D GM12878 ESC CD4 A549
RFX1Fork head / winged helix factorsEncodeEFC, RFXHEPG2
RFX2Fork head / winged helix factorsPublic-GP5D
RFX5Fork head / winged helix factorsEncode-SKNSH MCF7 K562 IMR90 HEPG2 HELA GM12878 ESC A549
RNF2UnknownPublic + EncodeBAP-1, BAP1, DING, HIPI3, RING1B, RING2NCCIT K562 HMELBRAF HEK293T GM12878 ESC
RUNXRunt domain factorsPublicRUNX1 + RUNX2 + RUNX3JURKAT
RUNX1Runt domain factorsPublic + EncodeAML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1, PEBP2aB, PEBP2alphaVCAP U937 TSU1621MT SKNO1 ME1 MCF7 KASUMI1 K562 JURKAT HL60 CD34 CCRFCEM BONE AMLBLAST
RUNX1T1UnknownPublicAML1-MTG8, AML1T1, CBFA2T1, CDR, ETO, MTG8, ZMYND2KASUMI1
RUNX2Runt domain factorsPublicAML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD, OSF-2, OSF2, PEA2aA, PEBP2aAIMSC3 C42B
RUNX3Runt domain factorsEncodeAML2, CBFA3, PEBP2aCGM12878
RXRNuclear receptors with C4 zinc fingersPublicRXRA + RXRB + RXRG , NR2B1 , DAUDI6, H-2RIIBP, NR2B2, RCoR-1 , NR2B3, RXRCTSU1621MT THP1 MACROPHAGE LS180
RXRANuclear receptors with C4 zinc fingersEncodeNR2B1SKNSH HEPG2 GM12878 ESC
RYBPUnknownPublicAAP1, APAP-1, DEDAF, YEAF1HEK293T
SAP30UnknownEncode-K562 ESC
SATB1Homeo domain factorsPublic-SHSY5Y
SETDB1UnknownPublic + EncodeESET, H3-K9-HMTase4, KG1T, KMT1E, TDRD21WN8532 U2OS K562
SFMBT1UnknownPublicRU1, SFMBT, hSFMBTHELA
SGF29UnknownPublicCCDC101, STAF36, TDRD29HELA
SIN3AUnknownEncodeWITKOSSKNSH PFSK1 PANC1 MCF7 K562 HEPG2 HCT166 GM12878 ESC A549
SIN3BUnknownEncode-K562 HEPG2
SIRT3UnknownPublicSIR2L3U2OS
SIRT6UnknownEncodeSIR2L6K562 ESC
SIX2Homeo domain factorsPublic-KIDNEY HEK
SIX5Homeo domain factorsEncodeBOR2, DMAHPK562 GM12878 ESC A549
SMAD1SMAD/NF-1 DNA-binding domain factorsPublic + EncodeBSP-1, BSP1, JV4-1, JV41, MADH1, MADR1K562 CD34 BGO3
SMAD2SMAD/NF-1 DNA-binding domain factorsPublic + EncodeJV18, JV18-1, MADH2, MADR2, hMAD-2, hSMAD2WA09 K562 ESC ENDODERM
SMAD3SMAD/NF-1 DNA-binding domain factorsPublicHSPC193, HsT17436, JV15-2, LDS1C, LDS3, MADH3NCIH441 LX2 ESC ENDODERM BGO3
SMAD4SMAD/NF-1 DNA-binding domain factorsPublicDPC4, JIP, MADH4, MYHRSESC ENDODERM
SMAD5SMAD/NF-1 DNA-binding domain factorsEncodeDWFC, JV5-1, MADH5K562 GM12878
SMARCA4UnknownPublic + EncodeBAF190, BAF190A, BRG1, CSS4, MRD16, RTPS2, SNF2, SNF2L4, SNF2LB, SWI2, hSNF2bMCF10A K562 HELA 501MEL
SMARCB1UnknownPublic + EncodeBAF47, CSS3, INI1, MRD15, PPP1R144, RDT, RTPS1, SNF5, SNF5L1, SWNTS1, Sfh1p, Snr1, hSNFSK562 HEPG2 HELA
SMARCC1Tryptophan cluster factorsEncodeBAF155, CRACC1, Rsc8, SRG3, SWI3HELA
SMARCC2Tryptophan cluster factorsEncodeBAF170, CRACC2, Rsc8HELA
SMC1AUnknownPublicCDLS2, DXS423E, SB1.8, SMC1, SMC1L1, SMC1alpha, SMCBLCL BCBL1
SMC3UnknownPublic + EncodeBAM, BMH, CDLS3, CSPG6, HCAP, SMC3L1U937 SKNSH NEURAL K562 HL60 HEPG2 HELA GP5D GM12878
SMC4UnknownPublicCAP-C, CAPC, SMC-4, SMC4L1HELA
SNAI2C2H2 zinc finger factorsPublicSLUG, SLUGH, SLUGH1, SNAIL2, WS2DKERATINOCYTE
SNAPC1UnknownPublicPTFgamma, SNAP43MCF10A
SNAPC4Tryptophan cluster factorsPublicPTFalpha, SNAP190MCF10A
SND1UnknownPublicTDRD11, Tudor-SN, p100NHEK
SOX10High-mobility group (HMG) domain factorsPublicDOM, PCWH, WS2E, WS4, WS4C501MEL
SOX11High-mobility group (HMG) domain factorsPublicMRD27GRANTA519
SOX13High-mobility group (HMG) domain factorsEncodeICA12, Sox-13HEPG2
SOX2High-mobility group (HMG) domain factorsPublicANOP3, MCOPS3TT RENVM KYSE70 IPSC HNSC GLIOMA ESC BJ
SOX6High-mobility group (HMG) domain factorsEncodeHSSOX6, SOXDK562
SOX9High-mobility group (HMG) domain factorsPublicCMD1, CMPD1, SRA1, SRXX2, SRXY10HT29
SP1C2H2 zinc finger factorsPublic + Encode-K562 HL60 HEPG2 HEK293T HCT166 GM12878 ESC A549
SP2C2H2 zinc finger factorsPublic + Encode-K562 HEPG2 HEK293T ESC
SP4C2H2 zinc finger factorsEncodeHF1B, SPR-1ESC
SPI1Tryptophan cluster factorsPublic + EncodeOF, PU.1, SFPI1, SPI-1, SPI-AU937 THP1 RSA411 OCILY7 OCILY3 OCILY10 NCIH929 MONOCYTE ME1 MACROPHAGE LCL KASUMI1 K562 HL60 GM12891 GM12878 DOHH2 DENDRITE CD34
SPIBTryptophan cluster factorsPublicSPI-BOCILY3 OCILY10
SREBF1Basic helix-loop-helix factors (bHLH)EncodeSREBP-1c, SREBP1, SREBP1a, bHLHd1MCF7 K562 HEPG2 GM12878 A549
SREBF2Basic helix-loop-helix factors (bHLH)EncodeSREBP-2, SREBP2, bHLHd2HEPG2 HELA GM12878 A549
SRFMADS box factorsEncodeMCM1MCF7 K562 ISHIKAWA HEPG2 HCT166 GM12878 ESC
SSRP1High-mobility group (HMG) domain factorsEncodeFACT, FACT80, T160HEPG2
STAG1UnknownPublicSA1, SCC3AU937 MCF7 HSPC HL60 HEPG2 ERYTHROID CHRF28811
STAT1STAT domain factorsPublic + EncodeCANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91K562 HELA GM12878 CD14
STAT2STAT domain factorsEncodeIMD44, ISGF-3, P113, STAT113K562
STAT3STAT domain factorsPublic + EncodeADMIO, ADMIO1, APRF, HIESU2932 SUDHL6 SUDHL4 SUDHL2 SUDHL10 OCILY7 OCILY3 OCILY19 OCILY10 MCF10A HELA GM12878 ESC
STAT5ASTAT domain factorsPublic + EncodeMGF, STAT5MV411 K562 GM12878
STAT5BSTAT domain factorsPublicSTAT5CD8
SUPT20HUnknownEncodeC13, C13orf19, FAM48A, FP757, P38IP, SPT20HELA GM12878
SUZ12UnknownPublic + EncodeCHET9, JJAZ1PROES NCCIT LNCAP K562 HEPG2 GM12878 ESC
SVILUnknownPublic-SHSY5Y
TT-Box factorsPublicSAVA, TFTESC
TAF1High-mobility group (HMG) domain factorsEncodeBA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, MRXS33, N-TAF1, NSCL2, OF, P250, TAF(II)250, TAF2A, TAFII-250, TAFII250, XDPSKNSH PFSK1 NEURAL MCF7 K562 ISHIKAWA HEPG2 HELA GM12892 GM12891 GM12878 ESC A549
TAF2UnknownPublicCIF150, MRT40, TAF2B, TAFII150ESC
TAF3UnknownPublicTAF140, TAFII-140, TAFII140HCT166
TAF7UnknownEncodeTAF2F, TAFII55K562 ESC
TAL1Basic helix-loop-helix factors (bHLH)Public + EncodeSCL, TCL5, bHLHa17, tal-1TSU1621MT RPMI8402 PROES PRIMA5 PRIMA2 MOLT3 ME1 K562 JURKAT HSPC ERYTHROID ECFC CHRF28811 CD34 CCRFCEM
TARDBPUnknownEncodeALS10, TDP-43K562 GM12878
TBL1XUnknownPublicEBI, SMAP55, TBL1HEK293T
TBL1XR1UnknownEncodeC21, DC42, IRA1, MRD41, TBLR1K562 HEPG2 GM12878
TBPTATA-binding proteinsPublic + EncodeGTF2D, GTF2D1, HDL4, SCA17, TFIIDME1 K562 HEPG2 HELA GM12878 ESC
TBX21T-Box factorsPublic + EncodeT-PET, T-bet, TBET, TBLYMGM12878 CD4
TCF12Basic helix-loop-helix factors (bHLH)Public + EncodeCRS3, HEB, HTF4, HsT17266, TCF-12, bHLHb20SKNSH RPMI8402 ME1 MCF7 KASUMI1 JURKAT ISHIKAWA HEPG2 GM12878 ESC CCRFCEM A549
TCF25UncharacterizedEncodeFKSG26, Hulp1, NULP1, PRO2620, hKIAA1049HEPG2
TCF3Basic helix-loop-helix factors (bHLH)Public + EncodeAGM8, E2A, E47, ITF1, TCF-3, VDIR, bHLHb21RPMI8402 KASUMI1 JURKAT GM12878 CCRFCEM
TCF4Basic helix-loop-helix factors (bHLH)PublicE2-2, FECD3, ITF-2, ITF2, PTHS, SEF-2, SEF2, SEF2-1, SEF2-1A, SEF2-1B, SEF2-1D, TCF-4, bHLHb19LS180
TCF7High-mobility group (HMG) domain factorsEncodeTCF-1K562 GM12878
TCF7L2High-mobility group (HMG) domain factorsPublic + EncodeTCF-4, TCF4PANC1 MDAMB453 MCF7 LNCAP HEPG2 HELA HEK293 HCT166 CD34
TEAD1TEA domain factorsPublicAA, NTEF-1, REF1, TCF-13, TCF13, TEAD-1, TEF-1PANCREAS MSTO HUCCT1 HFOB CCLP1
TEAD2TEA domain factorsEncodeETF, TEAD-2, TEF-4, TEF4K562
TEAD4TEA domain factorsPublic + EncodeEFTR-2, RTEF1, TCF13L1, TEF-3, TEF3, TEFR-1, hRTEF-1BWA09 SNU216 SKNSH MKN28 MDAMB231 MCF7 K562 ISHIKAWA HUCCT1 HEPG2 HCT166 ESC BE2C A549
TERF1UnknownPublicPIN2, TRBF1, TRF, TRF1, hTRF1-AS, t-TRF1LCL
TERF2UnknownPublicTRBF2, TRF2WI38VA13 LCL HELA
TET3UnknownPublichCG_40738HEK293T
TFAP2ABasic helix-span-helix factors (bHSH)PublicAP-2, AP-2alpha, AP2TF, BOFS, TFAP2MCF7
TFAP2CBasic helix-span-helix factors (bHSH)PublicAP2-GAMMA, ERF1, TFAP2G, hAP-2gSKBR3 MDAMB453 MCF7 BT474 A375
TFAP4Basic helix-loop-helix factors (bHLH)Public + EncodeAP-4, bHLHc41LNCAP KASUMI1 HEPG2 DLD1
TFDP1Fork head / winged helix factorsEncodeDILC, DP1, DRTF1, Dp-1K562
TGIF2Homeo domain factorsEncode-HEPG2
THAP1C2CH THAP-type zinc finger factorsEncodeDYT6K562
THAP11C2CH THAP-type zinc finger factorsPublicCTG-B43a, CTG-B45d, HRIHFB2206, RONINHELA
TLE3UnknownPublicESG, ESG3, GRG3, HsT18976MCF7
TOP1UnknownPublicTOPILNCAP HCT116
TP53p53 domain factorsPublicBCC7, LFS1, P53, TRP53U2OS SW480 SAOS2 NCIH1299 MCF7 KERATINOCYTE IMR90 HEPG2 HCT166 HCT116 GM06170 GM00011 ESC BC3
TP63p53 domain factorsPublicAIS, B(p51A), B(p51B), EEC3, KET, LMS, NBP, OFC8, RHS, SHFM4, TP53CP, TP53L, TP73L, p40, p51, p53CP, p63, p73H, p73LTT MDAMB231 MCF10A KYSE70 KERATINOCYTE HCC95 HACAT EP156T
TP73p53 domain factorsPublicP73SAOS2
TRIM22UnknownEncodeGPSTAF50, RNF94, STAF50GM12878
TRIM24UnknownPublicPTC6, RNF82, TF1A, TIF1, TIF1A, TIF1ALPHA, hTIF1LNCAP
TRIM28UnknownPublic + EncodeKAP1, PPP1R157, RNF96, TF1B, TIF1BWIBR3 U2OS TB40E K562 HEK293 HCT166
TRRAPUnknownPublicPAF350/400, PAF400, STAF40, TR-AP, Tra1HELA
TSC22D4Basic leucine zipper factors (bZIP)EncodeTHG-1, THG1, TILZ2K562
TWIST1Basic helix-loop-helix factors (bHLH)PublicACS3, BPES2, BPES3, CRS, CRS1, CSO, SCS, TWIST, bHLHa38SHEP21 BE2C
UBN1UnknownPublicVT, VT4HELA
UBTFHigh-mobility group (HMG) domain factorsPublic + EncodeNOR-90, UBF, UBF-1, UBF1, UBF2K562 GM12878 ESC
USF1Basic helix-loop-helix factors (bHLH)EncodeFCHL, FCHL1, HYPLIP1, MLTF, MLTFI, UEF, bHLHb11SKNSH K562 ISHIKAWA HEPG2 HCT166 GM12878 ESC A549
USF2Basic helix-loop-helix factors (bHLH)EncodeFIP, bHLHb12K562 HEPG2 HELA GM12878 ESC A549
USP7UnknownPublicHAUSP, TEF1HEK293T
VDRNuclear receptors with C4 zinc fingersPublicNR1I1, PPP1R163THP1 LX2 LS180 LNCAP LCLGM10861
WRNIP1UnknownEncodeWHIP, bA420G6.2GM12878
XBP1Basic leucine zipper factors (bZIP)PublicTREB-5, TREB5, XBP-1, XBP2T47D MDAMB231 HS578T
YAP1UnknownPublicCOB1, YAP, YAP2, YAP65, YKIMSTO MDAMB231 HUCCT1 CCLP1
YY1C2H2 zinc finger factorsPublic + EncodeDELTA, INO80S, NF-E1, UCRBP, YIN-YANG-1SKNSH NT2D1 LIVER K562 ISHIKAWA HEPG2 HELA HCT166 GM12892 GM12891 GM12878 ESC A549
ZBED1C2H2 zinc finger factorsEncodeALTE, DREF, TRAMP, hDREFK562 GM12878
ZBTB11C2H2 zinc finger factorsEncodeZNF-U69274, ZNF913MCF7 K562
ZBTB16C2H2 zinc finger factorsPublicPLZF, ZNF145ESC
ZBTB33C2H2 zinc finger factorsEncodeZNF-kaiso, ZNF348SKNSH K562 HEPG2 HCT166 GM12878 A549
ZBTB7AC2H2 zinc finger factorsEncodeFBI-1, FBI1, LRF, TIP21, ZBTB7, ZNF857A, pokemonK562 ISHIKAWA HEPG2
ZC3H11AUnknownEncodeZC3HDC11AK562 A549
ZC3H8C3H zinc finger factorsPublicFliz1, ZC3HDC8HCT166
ZEB1Homeo domain factorsPublic + EncodeAREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3, TCF8, ZFHEP, ZFHX1APDAC HEPG2 GM12878
ZEB2Homeo domain factorsEncodeHSPC082, SIP-1, SIP1, SMADIP1, ZFHX1BK562
ZFP36UnknownEncodeG0S24, GOS24, NUP475, RNF162A, TIS11, TTP, zfp-36HELA GM12878 A549
ZFXC2H2 zinc finger factorsPublic + EncodeZNF926RPMI8402 NOMO1 K562 DAOY
ZHX1Homeo domain factorsEncode-K562 HELA
ZHX2Homeo domain factorsEncodeAFR1, RAFHEPG2
ZKSCAN1C2H2 zinc finger factorsEncodeKOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33MCF7 K562 HEPG2 HELA
ZMIZ1UnknownEncodeMIZ, RAI17, TRAFIP10, ZIMP10, hZIMP10K562
ZMYND11UnknownPublicBRAM1, BS69, MRD30U2OS HELA
ZNF143C2H2 zinc finger factorsPublic + EncodeSBF, STAF, pHZ-1MCF7 K562 HPBALL HEPG2 HELA HEK293T GM12878 FLP76 FLP143HA ESC CUTLL1
ZNF165C2H2 zinc finger factorsPublicCT53, LD65, ZSCAN7WHIM12
ZNF175C2H2 zinc finger factorsEncodeOTK18K562 HEPG2
ZNF197C2H2 zinc finger factorsEncodeD3S1363E, P18, VHLaK, ZKSCAN9, ZNF166, ZNF20, ZSCAN41K562
ZNF207UnknownEncodeBuGZ, hBuGZGM12878
ZNF217C2H2 zinc finger factorsEncodeZABC1MCF7
ZNF24C2H2 zinc finger factorsEncodeKOX17, RSG-A, ZNF191, ZSCAN3, Zfp191K562
ZNF263C2H2 zinc finger factorsEncodeFPM315, ZKSCAN12, ZSCAN44K562 HEK293
ZNF274C2H2 zinc finger factorsEncodeHFB101, ZF2, ZKSCAN19, ZSCAN51NT2D1 K562 HELA GM12878 ESC
ZNF318UnknownEncodeHRIHFB2436, TZF, ZFP318K562
ZNF335C2H2 zinc finger factorsPublicMCPH10, NIF-1, NIF1, NIF2JURKAT
ZNF384C2H2 zinc finger factorsEncodeCAGH1, CAGH1A, CIZ, ERDA2, NMP4, NP, TNRC1K562 HEPG2 GM12878
ZNF584C2H2 zinc finger factorsEncode-K562
ZNF589C2H2 zinc finger factorsEncodeSZF1K562
ZNF592C2H2 zinc finger factorsEncodeCAMOS, SCAR5MCF7
ZNF639C2H2 zinc finger factorsEncodeANC-2H01, ANC_2H01, ZASC1K562
ZNF644C2H2 zinc finger factorsPublic + EncodeBM-005, MYP21, NatF, ZEP-2K562 HEK293T
ZNF740C2H2 zinc finger factorsEncodeZfp740K562
ZNF750UnknownPublicZFP750KERATINOCYTE
ZNF766C2H2 zinc finger factorsEncode-K562
ZNF83C2H2 zinc finger factorsEncodeHPF1, ZNF816BK562
ZNF92C2H2 zinc finger factorsPublicHEL-203, HPF12, HTF12, TF12RETINAL
ZZZ3UnknownEncodeATAC1HELA GM12878