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Several issues have been reported when running TBrowser with Java 1.7 a new version that correct several bugs was released on 17th october 2012.

 

 

 

 

 

 

 

 

 

 

 

 

 

Mine molecular interactions using InteractomeBrowser.

Watch the video here .

 

TBrowser team

 

The new version of TBrowser (3.0) is available featuring several new annotations (TargetScan, PicTar, TFBSConserved).

TB development team.

 

 

Laughing We have just released a new version of TBrowser (V3) available here ! It includes several new species and annotations (TFBS, microRNA, MSigDB,...). Feel free to give us feedbacks. TB development Team

 

WARNING !  Please note that both plugins and core application of TBrowser have been updated. If you encounter  problems: delete the .tbrowser folder. In case you are launching TBrowser within a terminal, please ensure that you have downloaded the latest version from our FTP site.

 

The article presenting TBrowser was published in PLoSONE.

Follow this link

 
TBrowser v2 has been released. This version contains lots of improvements and many new plugins. Try it !!
 
 
 
 
Heatmap plugin

A cluster enriched in genes located in the short arm of chromosome 1 (melanoma cell lines). 

 

 
TBCommonGenes plugin

A query with "CD3E & CD3D" (T-cell markers). TBCommonGenes performs plateform-independent analysis of the 87 TS and shows that 58 genes are found in at least 50% of the selected signatures.

 

 
KEGG Search plugin

KEGG pathway analysis using the list of genes (n=58) obtained using the TBCommonGenes plugin (see above). Genes that fall in the "T CELL RECEPTOR SIGNALLING" pathway are highlighted in red.

 

 
TBMAP plugin

Overlay of KEGG "[hsa04110] CELL CYCLE" pathway on GPL96 transcriptional map. 

 

 

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